STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBE4AUbiquitination factor E4A. (1085 aa)    
Predicted Functional Partners:
TRIP12
Thyroid hormone receptor interactor 12.
   
 0.931
UFD1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.900
YOD1
YOD1 deubiquitinase.
    
 
 0.885
VCP
Valosin containing protein; Belongs to the AAA ATPase family.
   
 
 0.791
RAD23B
RAD23 homolog B, nucleotide excision repair protein.
   
 0.786
RAD23A
RAD23 homolog A, nucleotide excision repair protein.
   
 0.786
NPLOC4
NPL4 homolog, ubiquitin recognition factor.
    
 
 0.749
FAAP100
FA core complex associated protein 100.
    
 
 0.749
NSFL1C
NSFL1 cofactor.
    
 
 0.668
UBXN2B
UBX domain protein 2B.
    
 
 0.668
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.