STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP38Ubiquitin specific peptidase 38; Belongs to the peptidase C19 family. (1088 aa)    
Predicted Functional Partners:
WDR48
WD repeat domain 48.
   
 0.827
WDR20
WD repeat domain 20.
   
 0.717
DMWD
DM1 locus, WD repeat containing.
   
 0.717
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.716
RPS27A
Ubiquitin-like domain-containing protein.
    
 0.646
G3U9C8_LOXAF
Ubiquitin-like domain-containing protein.
    
 0.646
FANCD2
FA complementation group D2.
    
 0.630
FANCI
FA complementation group I.
   
 0.600
UBB
Ubiquitin B.
    
 0.587
UBC
Uncharacterized protein.
    
 0.587
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.