STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TSHZ1Teashirt zinc finger homeobox 1. (1082 aa)    
Predicted Functional Partners:
IRX1
Iroquois homeobox 1.
   
 0.617
FOXP1
Fork-head domain-containing protein.
      
 0.610
AMIGO3
Adhesion molecule with Ig like domain 3.
      
 0.527
IRX2
Iroquois homeobox 2.
   
 0.480
SHOX
Short stature homeobox.
      
 0.427
SHH
Sonic hedgehog signaling molecule.
   
  
 0.424
BUB3
BUB3 mitotic checkpoint protein.
      
 0.405
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.