STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TSR3Probable ribosome biogenesis protein C16orf42 homolog; Probable pre-rRNA processing protein involved in ribosome biogenesis. (318 aa)    
Predicted Functional Partners:
TSR2
TSR2 ribosome maturation factor.
   
  
 0.879
TSR1
Bms1-type G domain-containing protein.
   
  
 0.803
METTL6
Methyltransferase-like protein; Belongs to the methyltransferase superfamily. METL family.
 
 
  
 0.767
BUD23
BUD23 rRNA methyltransferase and ribosome maturation factor.
   
  
 0.733
EMG1
EMG1 N1-specific pseudouridine methyltransferase.
   
  
 0.717
TRMT12
tRNA methyltransferase 12 homolog.
   
  
 0.700
TP53RK
TP53 regulating kinase.
 
      0.688
NOB1
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
   
  
 0.635
DUS4L
tRNA-dihydrouridine synthase; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs; Belongs to the dus family.
   
  
 0.624
DUS2
Dihydrouridine synthase 2.
   
  
 0.598
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.