STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MRPL54Mitochondrial ribosomal protein L54. (137 aa)    
Predicted Functional Partners:
MRPL17
Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
   
 
 0.910
HOGA1
4-hydroxy-2-oxoglutarate aldolase 1.
      
 0.906
MRPL27
Mitochondrial ribosomal protein L27.
   
 
 0.901
DHRS4
Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
      
 0.900
MRPS16
Mitochondrial ribosomal protein S16.
   
   0.897
MRPL41
Mitochondrial ribosomal protein L41.
   
 
 0.884
MRPL47
Mitochondrial ribosomal protein L47.
   
 
 0.879
MRPL46
Mitochondrial ribosomal protein L46.
   
 
 0.875
MRPL49
Mitochondrial ribosomal protein L49.
   
 
 0.868
MRPL43
L51_S25_CI-B8 domain-containing protein.
   
 
 0.866
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.