LARP1B protein (Equus caballus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LARP1B

La ribonucleoprotein domain family member 1B. (1106 aa)

Predicted Functional Partners:

LARP1

0.921

ZCCHC13

0.859

RRP12

0.821

EIF4E

0.702

TRIM69

0.697

DKC1

0.649

DHX15

0.644

EIF3G

0.580

RPS3

0.556

EDRF1

0.545

Your Current Organism:

Equus caballus

NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DHX15	DKC1	ENSECAP00000020897	ENSECAP00000021150	DEAH-box helicase 15.	Dyskerin pseudouridine synthase 1.	0.939
DHX15	LARP1	ENSECAP00000020897	ENSECAP00000026311	DEAH-box helicase 15.	La ribonucleoprotein domain family member 1.	0.729
DHX15	LARP1B	ENSECAP00000020897	ENSECAP00000001090	DEAH-box helicase 15.	La ribonucleoprotein domain family member 1B.	0.644
DHX15	RRP12	ENSECAP00000020897	ENSECAP00000028993	DEAH-box helicase 15.	Ribosomal RNA processing 12 homolog.	0.891
DKC1	DHX15	ENSECAP00000021150	ENSECAP00000020897	Dyskerin pseudouridine synthase 1.	DEAH-box helicase 15.	0.939
DKC1	EIF3G	ENSECAP00000021150	ENSECAP00000019065	Dyskerin pseudouridine synthase 1.	Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre- initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termi [...]	0.419
DKC1	LARP1	ENSECAP00000021150	ENSECAP00000026311	Dyskerin pseudouridine synthase 1.	La ribonucleoprotein domain family member 1.	0.649
DKC1	LARP1B	ENSECAP00000021150	ENSECAP00000001090	Dyskerin pseudouridine synthase 1.	La ribonucleoprotein domain family member 1B.	0.649
DKC1	RPS3	ENSECAP00000021150	ENSECAP00000011789	Dyskerin pseudouridine synthase 1.	Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.430
DKC1	RRP12	ENSECAP00000021150	ENSECAP00000028993	Dyskerin pseudouridine synthase 1.	Ribosomal RNA processing 12 homolog.	0.867
DKC1	ZCCHC13	ENSECAP00000021150	ENSECAP00000024923	Dyskerin pseudouridine synthase 1.	Zinc finger CCHC-type containing 13.	0.547
EDRF1	LARP1B	ENSECAP00000000679	ENSECAP00000001090	Erythroid differentiation regulatory factor 1.	La ribonucleoprotein domain family member 1B.	0.545
EIF3G	DKC1	ENSECAP00000019065	ENSECAP00000021150	Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre- initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termi [...]	Dyskerin pseudouridine synthase 1.	0.419
EIF3G	EIF4E	ENSECAP00000019065	ENSECAP00000052494	Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre- initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termi [...]	Eukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family.	0.560
EIF3G	LARP1B	ENSECAP00000019065	ENSECAP00000001090	Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre- initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termi [...]	La ribonucleoprotein domain family member 1B.	0.580
EIF3G	RPS3	ENSECAP00000019065	ENSECAP00000011789	Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre- initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termi [...]	Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.953
EIF3G	ZCCHC13	ENSECAP00000019065	ENSECAP00000024923	Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre- initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termi [...]	Zinc finger CCHC-type containing 13.	0.704
EIF4E	EIF3G	ENSECAP00000052494	ENSECAP00000019065	Eukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family.	Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre- initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termi [...]	0.560
EIF4E	LARP1	ENSECAP00000052494	ENSECAP00000026311	Eukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family.	La ribonucleoprotein domain family member 1.	0.833
EIF4E	LARP1B	ENSECAP00000052494	ENSECAP00000001090	Eukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family.	La ribonucleoprotein domain family member 1B.	0.702