STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PCDHB1Protocadherin beta 1. (818 aa)    
Predicted Functional Partners:
CARS1
Cysteinyl-tRNA synthetase.
      
 0.711
NAP1L4
Nucleosome assembly protein 1 like 4; Belongs to the nucleosome assembly protein (NAP) family.
   
  
 0.673
CARS2
Cysteinyl-tRNA synthetase 2, mitochondrial.
      
 0.659
UNCX
UNC homeobox.
      
 0.571
TMEM211
Transmembrane protein 211.
    
 0.542
RFX3
Regulatory factor X3.
   
  
 0.542
SMG1
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; Belongs to the PI3/PI4-kinase family.
    
 
 0.529
UBR4
Ubiquitin protein ligase E3 component n-recognin 4.
   
 
 0.492
EMC1
ER membrane protein complex subunit 1.
      
 0.482
SERINC2
Serine incorporator 2.
   
  
 0.482
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.