Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PCDHB1Protocadherin beta 1. (818 aa)    
Predicted Functional Partners:
CARS1
Cysteinyl-tRNA synthetase.
      
 0.690
NAP1L4
Nucleosome assembly protein 1 like 4; Belongs to the nucleosome assembly protein (NAP) family.
      
 0.683
CARS2
Cysteinyl-tRNA synthetase 2, mitochondrial.
      
 0.640
UNCX
UNC homeobox.
     
 0.587
TMEM211
Transmembrane protein 211.
    
 0.515
RFX3
Regulatory factor X3.
   
  
 0.508
IGSF9B
Immunoglobulin superfamily member 9B.
    
 0.477
SMG1
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; Belongs to the PI3/PI4-kinase family.
    
 
 0.469
CDKL1
Cyclin dependent kinase like 1; Belongs to the protein kinase superfamily.
      
 0.468
SMCHD1
Structural maintenance of chromosomes flexible hinge domain containing 1.
      
 0.460
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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