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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100055584Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family. (156 aa)    
Predicted Functional Partners:
RPS16
Ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.
  
 0.998
RPLP0
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
  
 0.997
RPS11
Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.
  
 
 0.996
RPS18
Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.
  
 
 0.996
RPS5
Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.
  
 
 0.996
RPL5
Ribosomal protein L5.
  
 0.996
RPL4
Ribosomal protein L4.
  
 0.996
RPS23
Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
  
 
 0.996
RPL17-C18orf32
RPL17-C18orf32 readthrough; Belongs to the universal ribosomal protein uL22 family.
  
 0.996
F7BVE8_HORSE
Ubiquitin-like domain-containing protein.
   
 0.995
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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