Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRIM54Tripartite motif containing 54. (359 aa)    
Predicted Functional Partners:
TRIM63
Tripartite motif containing 63.
   
  0.932
TRIM55
Tripartite motif containing 55.
   
 
 0.911
TRIM34
Uncharacterized protein.
    
 
 0.698
USP39
Ubiquitin specific peptidase 39.
    
 
 0.630
STAT3
Signal transducer and activator of transcription.
    
 0.617
SQSTM1
Sequestosome 1.
    
 0.553
FLNC
Filamin C.
   
 0.547
TRIM33
Tripartite motif containing 33.
    
 
 0.527
SENP7
SUMO specific peptidase 7.
    
 
 0.512
FLNA
Filamin A.
   
 0.498
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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