STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR1SWI5 dependent homologous recombination repair protein 1. (244 aa)    
Predicted Functional Partners:
LSM6
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
  
 0.674
RAD51B
RAD51 paralog B.
   
 0.614
XRCC3
DNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA, thought to repair chromosomal fragmentation, translocations and deletions; Belongs to the RecA family. RAD51 subfamily.
    
 0.613
RAD51D
DNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA breaks arising during DNA replication or induced by DNA-damaging agents; Belongs to the RecA family. RAD51 subfamily.
    
 0.613
SWI5
SWI5 homologous recombination repair protein.
   
 
 0.609
RAD51C
RAD51 paralog C.
   
 0.596
MEIOB
Meiosis specific with OB-fold.
      
 0.570
PRPF18
SFM domain-containing protein.
   
  
 0.556
XRCC2
X-ray repair cross complementing 2.
     
 0.549
RCBTB2
RCC1 and BTB domain containing protein 2.
   
  
 0.486
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.