STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VTA1Vesicle trafficking 1. (306 aa)    
Predicted Functional Partners:
VPS4B
Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family.
   
 0.999
VPS4A
Uncharacterized protein; Belongs to the AAA ATPase family.
   
 0.999
CHMP5
Charged multivesicular body protein 5.
   
 0.998
CHMP1A
Charged multivesicular body protein 1A.
    
 0.992
LOC100071734
Uncharacterized protein.
   
 0.985
GCH1
GTP cyclohydrolase 1.
   
   0.934
BCAS2
BCAS2 pre-mRNA processing factor.
   
   0.932
CHMP4C
Charged multivesicular body protein 4C.
    
 0.893
CHMP3
Uncharacterized protein.
   
 0.855
CHMP7
Charged multivesicular body protein 7.
   
 0.850
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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