STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX28DEAD-box helicase 28. (540 aa)    
Predicted Functional Partners:
UTP3
UTP3, small subunit processome component.
   
 0.941
MRM3
Mitochondrial rRNA methyltransferase 3.
  
 
 0.928
NGDN
Neuroguidin.
   
 0.925
GTPBP10
GTP binding protein 10.
  
 0.898
ESF1
ESF1 nucleolar pre-rRNA processing protein homolog.
   
 
 0.864
MRPL13
Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.
   
 0.862
DDX52
DExD-box helicase 52.
  
0.861
WDR46
WD repeat domain 46.
   
 0.857
MRPL4
Mitochondrial ribosomal protein L4.
   
 0.849
DDX49
DEAD-box helicase 49; Belongs to the DEAD box helicase family.
  
 
0.843
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.