STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LDB2LIM domain binding 2. (401 aa)    
Predicted Functional Partners:
TAL1
TAL bHLH transcription factor 1, erythroid differentiation factor.
   
 0.877
LMO2
LIM domain only 2.
   
 0.858
KCTD3
Potassium channel tetramerization domain containing 3.
      
 0.853
KCTD4
Potassium channel tetramerization domain containing 4.
      
 0.790
LMO3
LIM domain only 3.
   
 0.769
LMO1
LIM domain only 1.
    
 0.766
LHX9
LIM homeobox 9.
   
 0.738
ISL1
ISL LIM homeobox 1.
    
 0.732
TCF3
Transcription factor 3.
   
 0.711
LHX3
LIM homeobox 3.
    
 0.691
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.