STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VAMP8Vesicle associated membrane protein 8. (100 aa)    
Predicted Functional Partners:
STX4
Syntaxin 4; Belongs to the syntaxin family.
   
 0.999
STX17
Syntaxin 17; Belongs to the syntaxin family.
   
 0.999
SNAP29
Synaptosome associated protein 29.
   
 0.999
SNAP23
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.997
STX7
Syntaxin 7; Belongs to the syntaxin family.
   
 0.995
VTI1A
Vesicle transport through interaction with t-SNAREs 1A.
   
 0.989
BET1
BET1-like protein-like protein.
   
 0.988
STX5
Syntaxin 5; Belongs to the syntaxin family.
   
 0.986
GOSR1
Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.
    
 0.981
VTI1B
Vesicle transport through interaction with t-SNAREs 1B.
   
 0.976
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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