STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMNALamin A/C; Belongs to the intermediate filament family. (663 aa)    
Predicted Functional Partners:
EMD
Emerin.
    
 0.996
LMNB1
Lamin B1; Belongs to the intermediate filament family.
   
0.993
CASP6
Caspase 6; Belongs to the peptidase C14A family.
   
 0.990
LMNB2
Lamin B2; Belongs to the intermediate filament family.
    
0.987
BANF1
Barrier to autointegration factor 1.
   
 0.949
SUN2
Sad1 and UNC84 domain containing 2.
    
 0.948
SUN1
Sad1 and UNC84 domain containing 1.
    
 0.924
LOC100049805
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
    
 0.904
LOC100055651
Peptidase S1 domain-containing protein.
    
 0.904
LOC100050711
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
    
 0.904
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.