STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHD9Chromodomain helicase DNA binding protein 9. (2903 aa)    
Predicted Functional Partners:
PHF3
PHD finger protein 3.
   
 0.800
BDP1
B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.
   
 
 0.678
NECAB3
N-terminal EF-hand calcium binding protein 3.
    
 0.676
BAZ2B
Bromodomain adjacent to zinc finger domain 2B.
   
 0.666
BAZ1A
Bromodomain adjacent to zinc finger domain 1A.
   
 0.664
BRWD1
Bromodomain and WD repeat domain containing 1.
  
 0.662
CECR2
CECR2 histone acetyl-lysine reader.
   
 0.658
MED12L
Mediator complex subunit 12L.
   
 0.644
CBFA2T2
CBFA2/RUNX1 partner transcriptional co-repressor 2.
    
 
 0.642
TSEN15
tRNA splicing endonuclease subunit 15.
   
  
 0.639
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.