Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
USHBP1USH1 protein network component harmonin binding protein 1. (700 aa)    
Predicted Functional Partners:
ZBTB25
Zinc finger and BTB domain containing 25.
      
 0.903
ZMAT4
Zinc finger matrin-type 4.
      
 0.852
GMCL1
BTB domain-containing protein.
      
 0.832
KPNA6
Importin subunit alpha; Functions in nuclear protein import.
      
 0.804
MCCC2
Methylcrotonoyl-CoA carboxylase 2.
      
 0.721
KPNA1
Importin subunit alpha; Functions in nuclear protein import.
      
 0.709
MMRN2
Multimerin 2.
   
  
 0.699
MLH1
MutL homolog 1.
      
 0.630
MAGED1
MAGE family member D1.
      
 0.600
ADGRF5
Adhesion G protein-coupled receptor F5; Belongs to the G-protein coupled receptor 2 family.
  
  
 0.590
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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