ZSCAN29 protein (Equus caballus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ZSCAN29

Zinc finger and SCAN domain containing 29. (852 aa)

Predicted Functional Partners:

KNDC1

0.952

UTF1

0.656

KCTD6

0.575

PDAP1

0.570

NPAS4

0.558

ENOPH1

0.550

ATP6V1D

0.515

NDUFB7

0.509

POLR2D

0.505

SETD7

0.498

Your Current Organism:

Equus caballus

NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP6V1D	ENOPH1	ENSECAP00000015103	ENSECAP00000017163	V-type proton ATPase subunit D-like protein.	Enolase-phosphatase E1; Bifunctional enzyme that catalyzes the enolization of 2,3- diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK- MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene).	0.405
ATP6V1D	ZSCAN29	ENSECAP00000015103	ENSECAP00000010068	V-type proton ATPase subunit D-like protein.	Zinc finger and SCAN domain containing 29.	0.515
ENOPH1	ATP6V1D	ENSECAP00000017163	ENSECAP00000015103	Enolase-phosphatase E1; Bifunctional enzyme that catalyzes the enolization of 2,3- diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK- MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene).	V-type proton ATPase subunit D-like protein.	0.405
ENOPH1	POLR2D	ENSECAP00000017163	ENSECAP00000000343	Enolase-phosphatase E1; Bifunctional enzyme that catalyzes the enolization of 2,3- diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK- MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene).	RNA polymerase II subunit D.	0.425
ENOPH1	ZSCAN29	ENSECAP00000017163	ENSECAP00000010068	Enolase-phosphatase E1; Bifunctional enzyme that catalyzes the enolization of 2,3- diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK- MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene).	Zinc finger and SCAN domain containing 29.	0.550
KCTD6	NDUFB7	ENSECAP00000000244	ENSECAP00000015242	Potassium channel tetramerization domain containing 6.	NADH:ubiquinone oxidoreductase subunit B7.	0.478
KCTD6	PDAP1	ENSECAP00000000244	ENSECAP00000053696	Potassium channel tetramerization domain containing 6.	PDGFA associated protein 1.	0.566
KCTD6	ZSCAN29	ENSECAP00000000244	ENSECAP00000010068	Potassium channel tetramerization domain containing 6.	Zinc finger and SCAN domain containing 29.	0.575
KNDC1	UTF1	ENSECAP00000033885	ENSECAP00000041801	Kinase non-catalytic C-lobe domain containing 1.	Uncharacterized protein.	0.675
KNDC1	ZSCAN29	ENSECAP00000033885	ENSECAP00000010068	Kinase non-catalytic C-lobe domain containing 1.	Zinc finger and SCAN domain containing 29.	0.952
NDUFB7	KCTD6	ENSECAP00000015242	ENSECAP00000000244	NADH:ubiquinone oxidoreductase subunit B7.	Potassium channel tetramerization domain containing 6.	0.478
NDUFB7	PDAP1	ENSECAP00000015242	ENSECAP00000053696	NADH:ubiquinone oxidoreductase subunit B7.	PDGFA associated protein 1.	0.473
NDUFB7	ZSCAN29	ENSECAP00000015242	ENSECAP00000010068	NADH:ubiquinone oxidoreductase subunit B7.	Zinc finger and SCAN domain containing 29.	0.509
NPAS4	ZSCAN29	ENSECAP00000011395	ENSECAP00000010068	Neuronal PAS domain protein 4.	Zinc finger and SCAN domain containing 29.	0.558
PDAP1	KCTD6	ENSECAP00000053696	ENSECAP00000000244	PDGFA associated protein 1.	Potassium channel tetramerization domain containing 6.	0.566
PDAP1	NDUFB7	ENSECAP00000053696	ENSECAP00000015242	PDGFA associated protein 1.	NADH:ubiquinone oxidoreductase subunit B7.	0.473
PDAP1	ZSCAN29	ENSECAP00000053696	ENSECAP00000010068	PDGFA associated protein 1.	Zinc finger and SCAN domain containing 29.	0.570
POLR2D	ENOPH1	ENSECAP00000000343	ENSECAP00000017163	RNA polymerase II subunit D.	Enolase-phosphatase E1; Bifunctional enzyme that catalyzes the enolization of 2,3- diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK- MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene).	0.425
POLR2D	ZSCAN29	ENSECAP00000000343	ENSECAP00000010068	RNA polymerase II subunit D.	Zinc finger and SCAN domain containing 29.	0.505
SETD7	ZSCAN29	ENSECAP00000026966	ENSECAP00000010068	SET domain containing 7, histone lysine methyltransferase.	Zinc finger and SCAN domain containing 29.	0.498