STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC130Coiled-coil domain containing 130. (400 aa)    
Predicted Functional Partners:
PRPF19
Pre-mRNA processing factor 19.
    
   0.941
CDC40
Cell division cycle 40.
    
 
 0.934
CDC5L
Cell division cycle 5 like.
    
 
 0.931
JUP
Junction plakoglobin.
   
   0.930
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
    
   0.929
WDR25
WD repeat domain 25.
   
 
 0.775
GPATCH11
G-patch domain containing 11.
    
 
 0.705
B3GAT3
Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family.
 
 
    0.688
B3GAT2
Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family.
 
      0.664
NRDC
Nardilysin convertase.
   
  
 0.663
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.