STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAA1Serum amyloid A protein; Major acute phase reactant. Apolipoprotein of the HDL complex. (162 aa)    
Predicted Functional Partners:
LOC100051420
Lipocln_cytosolic_FA-bd_dom domain-containing protein.
   
  
 0.550
LOC100050034
Lipocln_cytosolic_FA-bd_dom domain-containing protein.
   
  
 0.550
LOC100050100
Lipocln_cytosolic_FA-bd_dom domain-containing protein.
   
  
 0.550
APOE
Apolipoprotein E.
     
 0.548
APOA1
Apolipoprotein A1.
     
 0.547
APOA4
Apolipoprotein A4.
     
 0.547
APOA2
Apolipoprotein A-II; May stabilize HDL (high density lipoprotein) structure by its association with lipids, and affect the HDL metabolism.
     
 0.544
ENSECAP00000035168
Serum amyloid A protein; Major acute phase reactant. Apolipoprotein of the HDL complex.
  
 
 
0.544
APOM
Apolipoprotein M.
     
 0.543
ENSECAP00000041260
Serum amyloid A protein; Major acute phase reactant. Apolipoprotein of the HDL complex.
  
 
 
0.542
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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