STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100058884Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (456 aa)    
Predicted Functional Partners:
HTR3A
5-hydroxytryptamine receptor 3A; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
   
0.976
LOC106780847
Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
  
 
 
0.902
GRIA3
Glutamate ionotropic receptor AMPA type subunit 3.
   
 
 0.497
SFTA2
Surfactant associated 2.
   
  
 0.470
WDR87
WD repeat domain 87.
  
   0.438
GRIN2B
Glutamate ionotropic receptor NMDA type subunit 2B.
     
 0.433
TMTC2
Transmembrane O-mannosyltransferase targeting cadherins 2.
   
 
 0.405
LOC100060521
Uncharacterized protein.
   
0.403
GRIN1
Glutamate ionotropic receptor NMDA type subunit 1.
   
 
 0.402
GRIA4
Glutamate ionotropic receptor AMPA type subunit 4.
   
 
 0.400
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.