STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DEPDC5DEP domain containing 5. (1602 aa)    
Predicted Functional Partners:
JMJD8
WD repeat domain 24.
   
 0.999
MIOS
Meiosis regulator for oocyte development.
   
 0.999
NPRL2
NPR2 like, GATOR1 complex subunit.
   
 0.999
WDR59
WD repeat domain 59.
   
 0.999
NPRL3
NPR3 like, GATOR1 complex subunit.
   
 0.999
SEC13
SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.
   
 0.996
C6H12orf66
Chromosome 6 C12orf66 homolog.
   
 0.993
RRAGC
Ras related GTP binding C.
   
 0.989
ITFG2
Integrin alpha FG-GAP repeat containing 2.
   
 0.987
KPTN
Kaptin, actin binding protein.
    
 0.985
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.