STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMCO5ATransmembrane and coiled-coil domains 5A. (300 aa)    
Predicted Functional Partners:
TMPRSS5
Transmembrane serine protease 5; Belongs to the peptidase S1 family.
      
 0.632
NCOA7
Nuclear receptor coactivator 7.
      
 0.578
IQSEC1
IQ motif and Sec7 domain 1.
      
 0.562
C20H6orf15
Chromosome 20 C6orf15 homolog.
   
  
 0.481
SNRPB2
U2 small nuclear ribonucleoprotein B''-like protein.
      
 0.476
CABS1
Calcium binding protein, spermatid associated 1.
      
 0.475
TFAP2D
Transcription factor AP-2 delta.
   
  
 0.473
LOC100067779
Olfactory receptor.
      
 0.473
NUP210L
Nucleoporin 210 like.
      
 0.472
CFAP58
Cilia and flagella associated protein 58.
   
  
 0.469
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.