STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTBP2Polypyrimidine tract binding protein 2. (537 aa)    
Predicted Functional Partners:
SFPQ
Splicing factor proline and glutamine rich.
   
 
 0.809
RBFOX1
RNA binding protein fox-1 homolog 1; RNA-binding protein that regulates alternative splicing events.
   
 
 0.780
HNRNPLL
Heterogeneous nuclear ribonucleoprotein L like.
   
0.713
RBFOX2
RNA binding fox-1 homolog 2.
    
 
 0.713
NOVA1
NOVA alternative splicing regulator 1.
   
 
 0.708
SRSF1
Serine and arginine rich splicing factor 1.
   
 0.689
RBFOX3
RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events.
    
 0.677
HNRNPC
RRM domain-containing protein.
   
 0.677
MEX3B
Mex-3 RNA binding family member B.
    
 0.667
LSM7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
      
 0.655
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.