STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCUBE3Signal peptide, CUB domain and EGF like domain containing 3. (993 aa)    
Predicted Functional Partners:
MMP9
Matrix metallopeptidase 9.
   
 0.869
SCUBE1
Signal peptide, CUB domain and EGF like domain containing 1.
  
  
0.864
ANKS1A
Ankyrin repeat and sterile alpha motif domain containing 1A.
   
 0.748
PACSIN1
Protein kinase C and casein kinase substrate in neurons 1.
      
 0.713
CDON
Cell adhesion associated, oncogene regulated.
    
 0.708
TAF11
TATA-box binding protein associated factor 11.
    
 
 0.699
MMP26
Matrix metallopeptidase 26.
   
 0.668
MMP20
Matrix metallopeptidase 20.
   
 0.663
MMP2
Matrix metallopeptidase 2.
   
 0.663
GCC2
GRIP and coiled-coil domain containing 2.
   
 0.662
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.