WDR46 protein (Equus caballus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

WDR46

WD repeat domain 46. (642 aa)

Predicted Functional Partners:

UTP3

0.999

UTP20

0.999

DCAF13

0.999

UTP4

0.999

KRR1

0.999

PDCD11

0.999

UTP11

0.999

UTP14A

0.999

NOP14

0.999

NGDN

0.998

Your Current Organism:

Equus caballus

NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DCAF13	KRR1	ENSECAP00000007855	ENSECAP00000015351	WD repeat and SOF domain-containing protein-like protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
DCAF13	NGDN	ENSECAP00000007855	ENSECAP00000004672	WD repeat and SOF domain-containing protein-like protein.	Neuroguidin.	0.995
DCAF13	NOP14	ENSECAP00000007855	ENSECAP00000021564	WD repeat and SOF domain-containing protein-like protein.	NOP14 nucleolar protein.	0.999
DCAF13	PDCD11	ENSECAP00000007855	ENSECAP00000018688	WD repeat and SOF domain-containing protein-like protein.	Programmed cell death 11.	0.995
DCAF13	UTP11	ENSECAP00000007855	ENSECAP00000019105	WD repeat and SOF domain-containing protein-like protein.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.998
DCAF13	UTP14A	ENSECAP00000007855	ENSECAP00000020417	WD repeat and SOF domain-containing protein-like protein.	Uncharacterized protein.	0.999
DCAF13	UTP20	ENSECAP00000007855	ENSECAP00000005563	WD repeat and SOF domain-containing protein-like protein.	UTP20 small subunit processome component.	0.997
DCAF13	UTP3	ENSECAP00000007855	ENSECAP00000003729	WD repeat and SOF domain-containing protein-like protein.	UTP3, small subunit processome component.	0.998
DCAF13	UTP4	ENSECAP00000007855	ENSECAP00000009950	WD repeat and SOF domain-containing protein-like protein.	UTP4 small subunit processome component.	0.998
DCAF13	WDR46	ENSECAP00000007855	ENSECAP00000014539	WD repeat and SOF domain-containing protein-like protein.	WD repeat domain 46.	0.999
KRR1	DCAF13	ENSECAP00000015351	ENSECAP00000007855	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	WD repeat and SOF domain-containing protein-like protein.	0.999
KRR1	NGDN	ENSECAP00000015351	ENSECAP00000004672	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Neuroguidin.	0.998
KRR1	NOP14	ENSECAP00000015351	ENSECAP00000021564	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	NOP14 nucleolar protein.	0.999
KRR1	PDCD11	ENSECAP00000015351	ENSECAP00000018688	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Programmed cell death 11.	0.998
KRR1	UTP11	ENSECAP00000015351	ENSECAP00000019105	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.999
KRR1	UTP14A	ENSECAP00000015351	ENSECAP00000020417	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Uncharacterized protein.	0.999
KRR1	UTP20	ENSECAP00000015351	ENSECAP00000005563	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	UTP20 small subunit processome component.	0.999
KRR1	UTP3	ENSECAP00000015351	ENSECAP00000003729	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	UTP3, small subunit processome component.	0.999
KRR1	UTP4	ENSECAP00000015351	ENSECAP00000009950	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	UTP4 small subunit processome component.	0.998
KRR1	WDR46	ENSECAP00000015351	ENSECAP00000014539	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	WD repeat domain 46.	0.999