STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLN6CLN6 transmembrane ER protein. (371 aa)    
Predicted Functional Partners:
CLN5
Uncharacterized protein.
  
   
 0.957
CLN8
CLN8 transmembrane ER and ERGIC protein.
      
 0.939
CLN3
Battenin.
      
 0.936
TPP1
Tripeptidyl peptidase 1.
    
 0.838
PPT1
Palmitoyl-protein thioesterase 1.
   
  
 0.813
ARSG
Arylsulfatase G.
   
  
 0.776
CTSD
Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.
      
 0.739
CALML4
Calmodulin like 4.
 
 
  0.715
MFSD8
Major facilitator superfamily domain containing 8.
      
 0.701
MFAP2
Cation-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type V subfamily.
   
  
 0.680
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.