STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PUM3Pumilio RNA binding family member 3. (647 aa)    
Predicted Functional Partners:
BRIX1
Biogenesis of ribosomes BRX1.
   
 
 0.982
GTPBP4
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
 
 0.976
RPF2
Brix domain-containing protein 1-like protein.
   
 
 0.976
EBNA1BP2
rRNA-processing protein EBP2-like protein.
   
 
 0.971
RBM28
RNA binding motif protein 28.
   
 
 0.964
NIFK
Nucleolar protein interacting with the FHA domain of MKI67.
   
 
 0.963
DDX18
RNA helicase.
   
 
 0.959
RRS1
Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.
   
 
 0.958
NOP58
NOP58 ribonucleoprotein.
   
   0.954
CEBPZ
CCAAT enhancer binding protein zeta.
   
 
 0.944
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
Server load: low (28%) [HD]