STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZC2HC1CZinc finger C2HC-type containing 1C. (530 aa)    
Predicted Functional Partners:
RBM25
RNA binding motif protein 25.
   
 
 0.714
MLH3
MutL homolog 3.
      
 0.714
RPS6KL1
Ribosomal protein S6 kinase like 1.
      
 0.693
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 
 0.663
CDC5L
Cell division cycle 5 like.
   
 
 0.660
U2AF2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
    
 
 0.651
SF3B2
Splicing factor 3b subunit 2.
   
 
 0.626
SF3B3
Splicing factor 3b subunit 3.
    
 
 0.624
PRPF39
Pre-mRNA processing factor 39.
    
 
 0.621
SNRNP35
Small nuclear ribonucleoprotein U11/U12 subunit 35.
   
 
 0.616
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.