STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C25H9orf78Chromosome 25 C9orf78 homolog. (508 aa)    
Predicted Functional Partners:
SLU7
SLU7 homolog, splicing factor.
   
 
 0.857
MED22
Mediator complex subunit 22.
   
  
 0.846
CDC40
Cell division cycle 40.
   
 
  0.814
PRPF8
Pre-mRNA processing factor 8.
   
 
 0.809
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
   
 
 0.797
PRPF38A
Pre-mRNA processing factor 38A.
   
  
 0.719
PFDN6
Prefoldin subunit 6.
   
    0.669
CWC22
CWC22 spliceosome associated protein homolog.
    
 0.667
NKAPL
NFKB activating protein like.
   
 
  0.651
NKAP
NFKB activating protein.
   
 
  0.651
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.