STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RGRRetinal G protein coupled receptor; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily. (291 aa)    
Predicted Functional Partners:
RBP3
Retinol binding protein 3.
   
  
 0.909
OTOP3
Otopetrin 3.
      
 0.757
TULP1
Tubby-like protein; Belongs to the TUB family.
   
 
 0.749
OPN1SW
Opsin 1, short wave sensitive.
   
 
0.727
HMGA1
High mobility group AT-hook 1.
      
 0.719
CNGB1
Uncharacterized protein.
   
 
 0.701
RDH5
Retinol dehydrogenase 5; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
  
 0.697
RD3
Retinal degeneration 3, GUCY2D regulator.
    
 
 0.691
NR2C1
Nuclear receptor subfamily 2 group C member 1.
     
 0.684
GNAT1
G protein subunit alpha transducin 1.
   
 0.660
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.