STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GIN1Gypsy retrotransposon integrase 1. (520 aa)    
Predicted Functional Partners:
UBXN8
UBX domain protein 8.
   
  
 0.909
CNBP
CCHC-type zinc finger nucleic acid binding protein.
    
 
 0.766
FANCM
FA complementation group M.
   
 0.725
PGBD5
PiggyBac transposable element derived 5.
   
 
 0.713
CTSE
Cathepsin E; Belongs to the peptidase A1 family.
      
 0.711
ENSECAP00000026302
Uncharacterized protein.
      
 0.670
PGBD1
PiggyBac transposable element derived 1.
   
 0.630
RELCH
RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing.
   
 
 0.620
ZNF862
Zinc finger protein 862.
    
 0.605
ZBED8
Zinc finger BED-type containing 8.
   
  
 0.590
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.