STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCAS2BCAS2 pre-mRNA processing factor. (225 aa)    
Predicted Functional Partners:
CDC5L
Cell division cycle 5 like.
   
 0.999
PLRG1
Pleiotropic regulator 1.
   
 0.999
PRPF19
Pre-mRNA processing factor 19.
   
 0.998
CWC15
CWC15 spliceosome associated protein homolog.
   
 0.993
CDC40
Cell division cycle 40.
   
 0.984
PRPF8
Pre-mRNA processing factor 8.
    
 0.981
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
   
 0.978
XAB2
XPA binding protein 2.
    
 0.978
SNRNP40
Small nuclear ribonucleoprotein U5 subunit 40.
   
 0.966
AQR
RNA helicase aquarius; Intron-binding spliceosomal protein required to link pre-mRNA splicing and snoRNP (small nucleolar ribonucleoprotein) biogenesis. Plays a key role in position-dependent assembly of intron-encoded box C/D small snoRNP, splicing being required for snoRNP assembly. May act by helping the folding of the snoRNA sequence. Binds to intron of pre- mRNAs in a sequence-independent manner, contacting the region between snoRNA and the branchpoint of introns (40 nucleotides upstream of the branchpoint) during the late stages of splicing.
   
 0.965
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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