STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDCD6Programmed cell death 6. (189 aa)    
Predicted Functional Partners:
PDCD6IP
Programmed cell death 6 interacting protein.
    
 
 0.812
UBL5
Ubiquitin like 5.
   
  
 0.801
SEC31A
SEC31 homolog A, COPII coat complex component.
   
 0.740
SEC31B
SEC31 homolog B, COPII coat complex component.
    
 0.738
FBXL12
F-box and leucine rich repeat protein 12.
    
 
 0.681
TSG101
Tumor susceptibility 101.
   
 
 0.679
OLFM2
Olfactomedin 2.
      
 0.652
PTPMT1
Protein tyrosine phosphatase mitochondrial 1.
      
 0.651
AHRR
Aryl-hydrocarbon receptor repressor.
   
  
 0.587
VPS4B
Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family.
   
 
 0.585
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.