PDCL protein (Equus caballus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PDCL

Phosducin like. (302 aa)

Predicted Functional Partners:

GNB5

0.968

GNB3

0.967

CCT7

0.867

GNB1

0.838

GNG5

0.822

GNB2

0.780

GNB4

0.772

CCT3

0.754

GNGT1

0.736

LTV1

0.679

Your Current Organism:

Equus caballus

NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCT3	CCT7	ENSECAP00000018356	ENSECAP00000014697	T-complex protein 1 subunit gamma.	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.999
CCT3	GNB1	ENSECAP00000018356	ENSECAP00000044508	T-complex protein 1 subunit gamma.	G protein subunit beta 1.	0.489
CCT3	GNB2	ENSECAP00000018356	ENSECAP00000014785	T-complex protein 1 subunit gamma.	G protein subunit beta 2.	0.545
CCT3	GNB3	ENSECAP00000018356	ENSECAP00000010274	T-complex protein 1 subunit gamma.	G protein subunit beta 3.	0.543
CCT3	GNB4	ENSECAP00000018356	ENSECAP00000006411	T-complex protein 1 subunit gamma.	G protein subunit beta 4.	0.484
CCT3	GNB5	ENSECAP00000018356	ENSECAP00000051417	T-complex protein 1 subunit gamma.	G protein subunit beta 5.	0.589
CCT3	GNG5	ENSECAP00000018356	ENSECAP00000031850	T-complex protein 1 subunit gamma.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.537
CCT3	PDCL	ENSECAP00000018356	ENSECAP00000018710	T-complex protein 1 subunit gamma.	Phosducin like.	0.754
CCT7	CCT3	ENSECAP00000014697	ENSECAP00000018356	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	T-complex protein 1 subunit gamma.	0.999
CCT7	GNB1	ENSECAP00000014697	ENSECAP00000044508	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	G protein subunit beta 1.	0.474
CCT7	GNB2	ENSECAP00000014697	ENSECAP00000014785	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	G protein subunit beta 2.	0.500
CCT7	GNB3	ENSECAP00000014697	ENSECAP00000010274	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	G protein subunit beta 3.	0.505
CCT7	GNB4	ENSECAP00000014697	ENSECAP00000006411	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	G protein subunit beta 4.	0.462
CCT7	GNB5	ENSECAP00000014697	ENSECAP00000051417	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	G protein subunit beta 5.	0.628
CCT7	GNG5	ENSECAP00000014697	ENSECAP00000031850	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.553
CCT7	GNGT1	ENSECAP00000014697	ENSECAP00000028555	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.429
CCT7	PDCL	ENSECAP00000014697	ENSECAP00000018710	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	Phosducin like.	0.867
GNB1	CCT3	ENSECAP00000044508	ENSECAP00000018356	G protein subunit beta 1.	T-complex protein 1 subunit gamma.	0.489
GNB1	CCT7	ENSECAP00000044508	ENSECAP00000014697	G protein subunit beta 1.	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.474
GNB1	GNB2	ENSECAP00000044508	ENSECAP00000014785	G protein subunit beta 1.	G protein subunit beta 2.	0.734