SF3B1 protein (Equus caballus) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

SF3B1

Splicing factor 3b subunit 1. (1337 aa)

Predicted Functional Partners:

SF3B5

0.999

SF3B3

0.999

DDX42

0.999

SF3B2

0.999

SF3B4

0.999

PHF5A

0.998

SF3A1

0.997

SF3B6

0.996

U2AF2

0.995

SNRPF

0.994

Your Current Organism:

Equus caballus

NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX42	PHF5A	ENSECAP00000020356	ENSECAP00000020637	DEAD-box helicase 42.	PHD finger-like domain-containing protein 5-like protein.	0.986
DDX42	SF3A1	ENSECAP00000020356	ENSECAP00000021544	DEAD-box helicase 42.	Splicing factor 3a subunit 1.	0.660
DDX42	SF3B1	ENSECAP00000020356	ENSECAP00000019342	DEAD-box helicase 42.	Splicing factor 3b subunit 1.	0.999
DDX42	SF3B2	ENSECAP00000020356	ENSECAP00000022125	DEAD-box helicase 42.	Splicing factor 3b subunit 2.	0.992
DDX42	SF3B3	ENSECAP00000020356	ENSECAP00000011754	DEAD-box helicase 42.	Splicing factor 3b subunit 3.	0.997
DDX42	SF3B4	ENSECAP00000020356	ENSECAP00000022284	DEAD-box helicase 42.	Splicing factor 3b subunit 4.	0.993
DDX42	SF3B5	ENSECAP00000020356	ENSECAP00000003758	DEAD-box helicase 42.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.993
DDX42	SF3B6	ENSECAP00000020356	ENSECAP00000013198	DEAD-box helicase 42.	Splicing factor 3b subunit 6.	0.973
DDX42	SNRPF	ENSECAP00000020356	ENSECAP00000017290	DEAD-box helicase 42.	Small nuclear ribonucleoprotein polypeptide F.	0.727
PHF5A	DDX42	ENSECAP00000020637	ENSECAP00000020356	PHD finger-like domain-containing protein 5-like protein.	DEAD-box helicase 42.	0.986
PHF5A	SF3A1	ENSECAP00000020637	ENSECAP00000021544	PHD finger-like domain-containing protein 5-like protein.	Splicing factor 3a subunit 1.	0.984
PHF5A	SF3B1	ENSECAP00000020637	ENSECAP00000019342	PHD finger-like domain-containing protein 5-like protein.	Splicing factor 3b subunit 1.	0.998
PHF5A	SF3B2	ENSECAP00000020637	ENSECAP00000022125	PHD finger-like domain-containing protein 5-like protein.	Splicing factor 3b subunit 2.	0.998
PHF5A	SF3B3	ENSECAP00000020637	ENSECAP00000011754	PHD finger-like domain-containing protein 5-like protein.	Splicing factor 3b subunit 3.	0.999
PHF5A	SF3B4	ENSECAP00000020637	ENSECAP00000022284	PHD finger-like domain-containing protein 5-like protein.	Splicing factor 3b subunit 4.	0.999
PHF5A	SF3B5	ENSECAP00000020637	ENSECAP00000003758	PHD finger-like domain-containing protein 5-like protein.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.999
PHF5A	SF3B6	ENSECAP00000020637	ENSECAP00000013198	PHD finger-like domain-containing protein 5-like protein.	Splicing factor 3b subunit 6.	0.993
PHF5A	SNRPF	ENSECAP00000020637	ENSECAP00000017290	PHD finger-like domain-containing protein 5-like protein.	Small nuclear ribonucleoprotein polypeptide F.	0.991
PHF5A	U2AF2	ENSECAP00000020637	ENSECAP00000027802	PHD finger-like domain-containing protein 5-like protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.966
SF3A1	DDX42	ENSECAP00000021544	ENSECAP00000020356	Splicing factor 3a subunit 1.	DEAD-box helicase 42.	0.660