STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB30Ras-related protein Rab-30-like protein. (203 aa)    
Predicted Functional Partners:
CCDC90B
Coiled-coil domain containing 90B.
   
  
 0.902
NOB1
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
   
  
 0.890
COG8
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
     
 0.865
ANKRD42
Ankyrin repeat domain 42.
      
 0.853
AVL9
AVL9 cell migration associated.
      
 0.831
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
      
 0.807
TTC39C
Tetratricopeptide repeat domain 39C.
      
 0.800
COG4
Component of oligomeric golgi complex 4.
    
 0.751
STX5
Syntaxin 5; Belongs to the syntaxin family.
      
 0.730
CHM
Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.
    
 0.721
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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