STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP34Ubiquitin specific peptidase 34; Belongs to the peptidase C19 family. (3542 aa)    
Predicted Functional Partners:
ASH1L
ASH1 like histone lysine methyltransferase.
   
 
 0.917
TRIP12
Thyroid hormone receptor interactor 12.
   
 
 0.874
SETD2
SET domain containing 2, histone lysine methyltransferase.
   
 
 0.838
ANKRD17
Ankyrin repeat domain 17.
   
 0.828
SMG1
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; Belongs to the PI3/PI4-kinase family.
   
   0.826
NIPBL
Nipped-B protein.
   
    0.797
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
 0.781
ATRX
ATRX chromatin remodeler.
   
 0.728
UBC
Ubiquitin B.
   
 0.720
RPS27A
Ribosomal protein S27a.
   
 0.720
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.