F6YCD9_HORSE protein (Equus caballus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

F6YCD9_HORSE

Reverse transcriptase domain-containing protein. (776 aa)

Predicted Functional Partners:

F7C1N4_HORSE

0.530

F7C182_HORSE

0.525

F6YX12_HORSE

0.509

F6SCV2_HORSE

0.448

F7BZ06_HORSE

0.439

F7AP15_HORSE

0.434

F6RGW1_HORSE

0.428

F6YR11_HORSE

0.422

Your Current Organism:

Equus caballus

NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6RGW1_HORSE	F6YCD9_HORSE	ENSECAP00000008523	ENSECAP00000021507	Reverse transcriptase domain-containing protein.	Reverse transcriptase domain-containing protein.	0.428
F6RGW1_HORSE	F6YR11_HORSE	ENSECAP00000008523	ENSECAP00000007426	Reverse transcriptase domain-containing protein.	Reverse transcriptase domain-containing protein.	0.474
F6RGW1_HORSE	F6YX12_HORSE	ENSECAP00000008523	ENSECAP00000014577	Reverse transcriptase domain-containing protein.	Reverse transcriptase domain-containing protein.	0.449
F6RGW1_HORSE	F7BZ06_HORSE	ENSECAP00000008523	ENSECAP00000005627	Reverse transcriptase domain-containing protein.	Reverse transcriptase domain-containing protein.	0.430
F6RGW1_HORSE	F7C1N4_HORSE	ENSECAP00000008523	ENSECAP00000008944	Reverse transcriptase domain-containing protein.	Reverse transcriptase domain-containing protein.	0.513
F6SCV2_HORSE	F6YCD9_HORSE	ENSECAP00000022035	ENSECAP00000021507	Reverse transcriptase domain-containing protein.	Reverse transcriptase domain-containing protein.	0.448
F6SCV2_HORSE	F6YX12_HORSE	ENSECAP00000022035	ENSECAP00000014577	Reverse transcriptase domain-containing protein.	Reverse transcriptase domain-containing protein.	0.504
F6SCV2_HORSE	F7AP15_HORSE	ENSECAP00000022035	ENSECAP00000011855	Reverse transcriptase domain-containing protein.	Reverse transcriptase domain-containing protein.	0.505
F6SCV2_HORSE	F7BZ06_HORSE	ENSECAP00000022035	ENSECAP00000005627	Reverse transcriptase domain-containing protein.	Reverse transcriptase domain-containing protein.	0.509
F6SCV2_HORSE	F7C182_HORSE	ENSECAP00000022035	ENSECAP00000000481	Reverse transcriptase domain-containing protein.	Uncharacterized protein.	0.504
F6SCV2_HORSE	F7C1N4_HORSE	ENSECAP00000022035	ENSECAP00000008944	Reverse transcriptase domain-containing protein.	Reverse transcriptase domain-containing protein.	0.435
F6YCD9_HORSE	F6RGW1_HORSE	ENSECAP00000021507	ENSECAP00000008523	Reverse transcriptase domain-containing protein.	Reverse transcriptase domain-containing protein.	0.428
F6YCD9_HORSE	F6SCV2_HORSE	ENSECAP00000021507	ENSECAP00000022035	Reverse transcriptase domain-containing protein.	Reverse transcriptase domain-containing protein.	0.448
F6YCD9_HORSE	F6YR11_HORSE	ENSECAP00000021507	ENSECAP00000007426	Reverse transcriptase domain-containing protein.	Reverse transcriptase domain-containing protein.	0.422
F6YCD9_HORSE	F6YX12_HORSE	ENSECAP00000021507	ENSECAP00000014577	Reverse transcriptase domain-containing protein.	Reverse transcriptase domain-containing protein.	0.509
F6YCD9_HORSE	F7AP15_HORSE	ENSECAP00000021507	ENSECAP00000011855	Reverse transcriptase domain-containing protein.	Reverse transcriptase domain-containing protein.	0.434
F6YCD9_HORSE	F7BZ06_HORSE	ENSECAP00000021507	ENSECAP00000005627	Reverse transcriptase domain-containing protein.	Reverse transcriptase domain-containing protein.	0.439
F6YCD9_HORSE	F7C182_HORSE	ENSECAP00000021507	ENSECAP00000000481	Reverse transcriptase domain-containing protein.	Uncharacterized protein.	0.525
F6YCD9_HORSE	F7C1N4_HORSE	ENSECAP00000021507	ENSECAP00000008944	Reverse transcriptase domain-containing protein.	Reverse transcriptase domain-containing protein.	0.530
F6YR11_HORSE	F6RGW1_HORSE	ENSECAP00000007426	ENSECAP00000008523	Reverse transcriptase domain-containing protein.	Reverse transcriptase domain-containing protein.	0.474