STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPF18SFM domain-containing protein. (351 aa)    
Predicted Functional Partners:
SLU7
SLU7 homolog, splicing factor.
  
 0.990
CDC5L
Cell division cycle 5 like.
   
 
 0.969
BUD31
BUD31 homolog.
   
 
 0.962
CWC22
CWC22 spliceosome associated protein homolog.
   
 0.947
PRPF8
Pre-mRNA processing factor 8.
   
 0.938
CDC40
Cell division cycle 40.
   
 0.918
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
   
 0.900
GGPS1
Geranylgeranyl diphosphate synthase 1; Belongs to the FPP/GGPP synthase family.
 
 
    0.895
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
   
 0.872
DHX38
DEAH-box helicase 38.
   
 0.871
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.