LMO7 protein (Equus caballus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LMO7

LIM domain 7. (1753 aa)

Predicted Functional Partners:

EMD

0.872

PDE8B

0.673

PLCL2

0.672

COMMD6

0.597

ANKS1B

0.529

UBA3

0.525

NEDD8

0.523

NAE1

0.522

RBM24

0.511

LIMK2

0.509

Your Current Organism:

Equus caballus

NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANKS1B	LMO7	ENSECAP00000009442	ENSECAP00000025807	Ankyrin repeat and sterile alpha motif domain containing 1B.	LIM domain 7.	0.529
ANKS1B	PDE8B	ENSECAP00000009442	ENSECAP00000037202	Ankyrin repeat and sterile alpha motif domain containing 1B.	Phosphodiesterase.	0.682
ANKS1B	PLCL2	ENSECAP00000009442	ENSECAP00000036304	Ankyrin repeat and sterile alpha motif domain containing 1B.	Phosphoinositide phospholipase C.	0.703
COMMD6	LMO7	ENSECAP00000021493	ENSECAP00000025807	COMM domain containing 6.	LIM domain 7.	0.597
COMMD6	NAE1	ENSECAP00000021493	ENSECAP00000038752	COMM domain containing 6.	NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric UBA3-NAE1 E1 enzyme. E1 activates NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-UBA3 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of UBE2M. Belongs to the ubiquitin-activating E1 family. ULA1 subfamily.	0.518
COMMD6	NEDD8	ENSECAP00000021493	ENSECAP00000040498	COMM domain containing 6.	NEDD8 ubiquitin like modifier.	0.594
COMMD6	UBA3	ENSECAP00000021493	ENSECAP00000043479	COMM domain containing 6.	Ubiquitin like modifier activating enzyme 3.	0.579
EMD	LMO7	ENSECAP00000011708	ENSECAP00000025807	Emerin.	LIM domain 7.	0.872
LIMK2	LMO7	ENSECAP00000033267	ENSECAP00000025807	LIM domain kinase 2.	LIM domain 7.	0.509
LMO7	ANKS1B	ENSECAP00000025807	ENSECAP00000009442	LIM domain 7.	Ankyrin repeat and sterile alpha motif domain containing 1B.	0.529
LMO7	COMMD6	ENSECAP00000025807	ENSECAP00000021493	LIM domain 7.	COMM domain containing 6.	0.597
LMO7	EMD	ENSECAP00000025807	ENSECAP00000011708	LIM domain 7.	Emerin.	0.872
LMO7	LIMK2	ENSECAP00000025807	ENSECAP00000033267	LIM domain 7.	LIM domain kinase 2.	0.509
LMO7	NAE1	ENSECAP00000025807	ENSECAP00000038752	LIM domain 7.	NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric UBA3-NAE1 E1 enzyme. E1 activates NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-UBA3 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of UBE2M. Belongs to the ubiquitin-activating E1 family. ULA1 subfamily.	0.522
LMO7	NEDD8	ENSECAP00000025807	ENSECAP00000040498	LIM domain 7.	NEDD8 ubiquitin like modifier.	0.523
LMO7	PDE8B	ENSECAP00000025807	ENSECAP00000037202	LIM domain 7.	Phosphodiesterase.	0.673
LMO7	PLCL2	ENSECAP00000025807	ENSECAP00000036304	LIM domain 7.	Phosphoinositide phospholipase C.	0.672
LMO7	RBM24	ENSECAP00000025807	ENSECAP00000038272	LIM domain 7.	RNA binding motif protein 24.	0.511
LMO7	UBA3	ENSECAP00000025807	ENSECAP00000043479	LIM domain 7.	Ubiquitin like modifier activating enzyme 3.	0.525
NAE1	COMMD6	ENSECAP00000038752	ENSECAP00000021493	NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric UBA3-NAE1 E1 enzyme. E1 activates NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-UBA3 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of UBE2M. Belongs to the ubiquitin-activating E1 family. ULA1 subfamily.	COMM domain containing 6.	0.518