STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FAM98CFamily with sequence similarity 98 member C. (496 aa)    
Predicted Functional Partners:
DDX1
DEAD-box helicase 1.
   
 0.801
RTRAF
RNA transcription, translation and transport factor.
    
 0.778
RTCB
RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.
    
 0.656
C15H2orf49
Chromosome 15 C2orf49 homolog.
     
 0.575
CD2BP2
CD2 cytoplasmic tail binding protein 2.
   
  
 0.571
FAM98B
Family with sequence similarity 98 member B.
    
 
0.540
ZBTB8OS
Zinc finger and BTB domain containing 8 opposite strand.
   
 
  0.540
FAM98A
Family with sequence similarity 98 member A.
     
 
0.540
TRIM59
Tripartite motif containing 59.
    
 
 0.498
STXBP2
Syntaxin binding protein 2; Belongs to the STXBP/unc-18/SEC1 family.
   
  
 0.496
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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