STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS4BVacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family. (469 aa)    
Predicted Functional Partners:
VTA1
Vesicle trafficking 1.
   
 0.999
CHMP5
Charged multivesicular body protein 5.
   
 0.997
VPS4A
Uncharacterized protein; Belongs to the AAA ATPase family.
  
0.995
CHMP2A
Charged multivesicular body protein 2A.
   
 0.985
CHMP1A
Charged multivesicular body protein 1A.
   
 0.985
CHMP6
Charged multivesicular body protein 6.
   
 0.976
LOC100071734
Uncharacterized protein.
   
 0.976
CHMP2B
Charged multivesicular body protein 2B.
   
 0.966
CHMP3
Uncharacterized protein.
   
 0.930
MLKL
Mixed lineage kinase domain like pseudokinase.
   
 0.920
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.