STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMEM40Transmembrane protein 40. (370 aa)    
Predicted Functional Partners:
SMIM3
Small integral membrane protein 3.
      
 0.766
TNFAIP8L1
TNF alpha induced protein 8 like 1.
      
 0.761
GP1BB
Glycoprotein Ib platelet subunit beta.
   
  
 0.759
DNAJC1
DnaJ heat shock protein family (Hsp40) member C1.
   
  
 0.741
PPP1R14C
Uncharacterized protein.
      
 0.719
PRTFDC1
Phosphoribosyl transferase domain containing 1.
      
 0.713
FDXR
NADPH:adrenodoxin oxidoreductase, mitochondrial.
   
  
 0.652
LITAF
Lipopolysaccharide induced TNF factor.
      
 0.589
KLF10
Kruppel like factor 10.
      
 0.472
TRPC6
Transient receptor potential cation channel subfamily C member 6; Belongs to the transient receptor (TC 1.A.4) family.
      
 0.463
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.