EFCAB10 protein (Equus caballus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EFCAB10

EF-hand calcium binding domain 10. (150 aa)

Predicted Functional Partners:

CDK20

0.766

CYP2C92

0.739

KIR3DL

0.692

TP53I11

0.691

CALCB

0.679

RGS13

0.633

CXCL17-2

0.590

CXCL17

0.590

C3H16orf78

0.534

CFAP206

0.511

Your Current Organism:

Equus caballus

NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3H16orf78	CFAP206	ENSECAP00000000096	ENSECAP00000017322	Chromosome 3 C16orf78 homolog.	Cilia and flagella associated protein 206.	0.478
C3H16orf78	EFCAB10	ENSECAP00000000096	ENSECAP00000028990	Chromosome 3 C16orf78 homolog.	EF-hand calcium binding domain 10.	0.534
CALCB	CDK20	ENSECAP00000053164	ENSECAP00000022546	Calcitonin gene-related peptide 2; CGRP induces vasodilation. It dilates a variety of vessels including the coronary, cerebral and systemic vasculature. Its abundance in the CNS also points toward a neurotransmitter or neuromodulator role (By similarity); Belongs to the calcitonin family.	Cyclin dependent kinase 20; Belongs to the protein kinase superfamily.	0.692
CALCB	CXCL17	ENSECAP00000053164	ENSECAP00000036641	Calcitonin gene-related peptide 2; CGRP induces vasodilation. It dilates a variety of vessels including the coronary, cerebral and systemic vasculature. Its abundance in the CNS also points toward a neurotransmitter or neuromodulator role (By similarity); Belongs to the calcitonin family.	Uncharacterized protein.	0.472
CALCB	CXCL17-2	ENSECAP00000053164	ENSECAP00000000507	Calcitonin gene-related peptide 2; CGRP induces vasodilation. It dilates a variety of vessels including the coronary, cerebral and systemic vasculature. Its abundance in the CNS also points toward a neurotransmitter or neuromodulator role (By similarity); Belongs to the calcitonin family.	C-X-C motif chemokine ligand 17.	0.472
CALCB	CYP2C92	ENSECAP00000053164	ENSECAP00000003892	Calcitonin gene-related peptide 2; CGRP induces vasodilation. It dilates a variety of vessels including the coronary, cerebral and systemic vasculature. Its abundance in the CNS also points toward a neurotransmitter or neuromodulator role (By similarity); Belongs to the calcitonin family.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.672
CALCB	EFCAB10	ENSECAP00000053164	ENSECAP00000028990	Calcitonin gene-related peptide 2; CGRP induces vasodilation. It dilates a variety of vessels including the coronary, cerebral and systemic vasculature. Its abundance in the CNS also points toward a neurotransmitter or neuromodulator role (By similarity); Belongs to the calcitonin family.	EF-hand calcium binding domain 10.	0.679
CALCB	KIR3DL	ENSECAP00000053164	ENSECAP00000014906	Calcitonin gene-related peptide 2; CGRP induces vasodilation. It dilates a variety of vessels including the coronary, cerebral and systemic vasculature. Its abundance in the CNS also points toward a neurotransmitter or neuromodulator role (By similarity); Belongs to the calcitonin family.	Ig-like domain-containing protein.	0.649
CALCB	RGS13	ENSECAP00000053164	ENSECAP00000009425	Calcitonin gene-related peptide 2; CGRP induces vasodilation. It dilates a variety of vessels including the coronary, cerebral and systemic vasculature. Its abundance in the CNS also points toward a neurotransmitter or neuromodulator role (By similarity); Belongs to the calcitonin family.	Regulator of G protein signaling 13.	0.515
CALCB	TP53I11	ENSECAP00000053164	ENSECAP00000020621	Calcitonin gene-related peptide 2; CGRP induces vasodilation. It dilates a variety of vessels including the coronary, cerebral and systemic vasculature. Its abundance in the CNS also points toward a neurotransmitter or neuromodulator role (By similarity); Belongs to the calcitonin family.	Tumor protein p53 inducible protein 11.	0.636
CDK20	CALCB	ENSECAP00000022546	ENSECAP00000053164	Cyclin dependent kinase 20; Belongs to the protein kinase superfamily.	Calcitonin gene-related peptide 2; CGRP induces vasodilation. It dilates a variety of vessels including the coronary, cerebral and systemic vasculature. Its abundance in the CNS also points toward a neurotransmitter or neuromodulator role (By similarity); Belongs to the calcitonin family.	0.692
CDK20	CXCL17	ENSECAP00000022546	ENSECAP00000036641	Cyclin dependent kinase 20; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.589
CDK20	CXCL17-2	ENSECAP00000022546	ENSECAP00000000507	Cyclin dependent kinase 20; Belongs to the protein kinase superfamily.	C-X-C motif chemokine ligand 17.	0.589
CDK20	CYP2C92	ENSECAP00000022546	ENSECAP00000003892	Cyclin dependent kinase 20; Belongs to the protein kinase superfamily.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.758
CDK20	EFCAB10	ENSECAP00000022546	ENSECAP00000028990	Cyclin dependent kinase 20; Belongs to the protein kinase superfamily.	EF-hand calcium binding domain 10.	0.766
CDK20	KIR3DL	ENSECAP00000022546	ENSECAP00000014906	Cyclin dependent kinase 20; Belongs to the protein kinase superfamily.	Ig-like domain-containing protein.	0.712
CDK20	RGS13	ENSECAP00000022546	ENSECAP00000009425	Cyclin dependent kinase 20; Belongs to the protein kinase superfamily.	Regulator of G protein signaling 13.	0.635
CDK20	TP53I11	ENSECAP00000022546	ENSECAP00000020621	Cyclin dependent kinase 20; Belongs to the protein kinase superfamily.	Tumor protein p53 inducible protein 11.	0.697
CFAP206	C3H16orf78	ENSECAP00000017322	ENSECAP00000000096	Cilia and flagella associated protein 206.	Chromosome 3 C16orf78 homolog.	0.478
CFAP206	EFCAB10	ENSECAP00000017322	ENSECAP00000028990	Cilia and flagella associated protein 206.	EF-hand calcium binding domain 10.	0.511