ZNF516 protein (Equus caballus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ZNF516

Zinc finger protein 516. (1131 aa)

Predicted Functional Partners:

ARHGEF7

0.800

PRSS37

0.791

PEX11A

0.770

MEX3C

0.740

SLC35F1

0.698

CTBP1

0.652

PRDM16

0.618

GNGT1

0.589

SDK2

0.570

KDM1A

0.568

Your Current Organism:

Equus caballus

NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARHGEF7	PRSS37	ENSECAP00000046538	ENSECAP00000031944	Rho guanine nucleotide exchange factor 7.	Serine protease 37.	0.770
ARHGEF7	ZNF516	ENSECAP00000046538	ENSECAP00000029021	Rho guanine nucleotide exchange factor 7.	Zinc finger protein 516.	0.800
CTBP1	KDM1A	ENSECAP00000027953	ENSECAP00000048041	C-terminal binding protein 1.	Lysine demethylase 1A.	0.620
CTBP1	PRDM16	ENSECAP00000027953	ENSECAP00000015057	C-terminal binding protein 1.	PR/SET domain 16.	0.651
CTBP1	ZNF516	ENSECAP00000027953	ENSECAP00000029021	C-terminal binding protein 1.	Zinc finger protein 516.	0.652
GNGT1	PEX11A	ENSECAP00000028555	ENSECAP00000007973	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Peroxisomal biogenesis factor 11 alpha.	0.472
GNGT1	ZNF516	ENSECAP00000028555	ENSECAP00000029021	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Zinc finger protein 516.	0.589
KDM1A	CTBP1	ENSECAP00000048041	ENSECAP00000027953	Lysine demethylase 1A.	C-terminal binding protein 1.	0.620
KDM1A	PRDM16	ENSECAP00000048041	ENSECAP00000015057	Lysine demethylase 1A.	PR/SET domain 16.	0.916
KDM1A	ZNF516	ENSECAP00000048041	ENSECAP00000029021	Lysine demethylase 1A.	Zinc finger protein 516.	0.568
MEX3C	ZNF516	ENSECAP00000019140	ENSECAP00000029021	Mex-3 RNA binding family member C.	Zinc finger protein 516.	0.740
PEX11A	GNGT1	ENSECAP00000007973	ENSECAP00000028555	Peroxisomal biogenesis factor 11 alpha.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.472
PEX11A	ZNF516	ENSECAP00000007973	ENSECAP00000029021	Peroxisomal biogenesis factor 11 alpha.	Zinc finger protein 516.	0.770
PRDM16	CTBP1	ENSECAP00000015057	ENSECAP00000027953	PR/SET domain 16.	C-terminal binding protein 1.	0.651
PRDM16	KDM1A	ENSECAP00000015057	ENSECAP00000048041	PR/SET domain 16.	Lysine demethylase 1A.	0.916
PRDM16	ZNF516	ENSECAP00000015057	ENSECAP00000029021	PR/SET domain 16.	Zinc finger protein 516.	0.618
PRSS37	ARHGEF7	ENSECAP00000031944	ENSECAP00000046538	Serine protease 37.	Rho guanine nucleotide exchange factor 7.	0.770
PRSS37	ZNF516	ENSECAP00000031944	ENSECAP00000029021	Serine protease 37.	Zinc finger protein 516.	0.791
SDK2	SLC35F1	ENSECAP00000033814	ENSECAP00000045886	Sidekick cell adhesion molecule 2.	Solute carrier family 35 member F1.	0.733
SDK2	ZNF516	ENSECAP00000033814	ENSECAP00000029021	Sidekick cell adhesion molecule 2.	Zinc finger protein 516.	0.570