STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SVIPUncharacterized protein. (225 aa)    
Predicted Functional Partners:
VCP
Valosin containing protein; Belongs to the AAA ATPase family.
    
 0.970
NPLOC4
NPL4 homolog, ubiquitin recognition factor.
    
 0.923
NSFL1C
NSFL1 cofactor.
     
 0.919
UBXN2A
UBX domain protein 2A.
     
 0.919
UBXN1
UBX domain protein 1.
     
 0.918
UBXN6
UBX domain protein 6.
    
 0.915
UBXN8
UBX domain protein 8.
     
 0.911
LPCAT3
Lysophosphatidylcholine acyltransferase 3; Belongs to the membrane-bound acyltransferase family.
      
 0.566
ARL6IP5
PRA1 family protein.
      
 0.475
BLVRB
Biliverdin reductase B.
      
 0.474
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.