PM20D1 protein (Equus caballus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PM20D1

Peptidase M20 domain containing 1. (503 aa)

Predicted Functional Partners:

ASS1

0.832

OAT

0.782

CPN1

0.770

OTC

0.757

APOO

0.740

PSAT1

0.737

SCPEP1

0.727

HSD17B11

0.713

PBLD

0.658

LIPC

0.650

Your Current Organism:

Equus caballus

NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APOO	CPN1	ENSECAP00000011220	ENSECAP00000021654	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	Carboxypeptidase N subunit 1.	0.793
APOO	HSD17B11	ENSECAP00000011220	ENSECAP00000006260	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	Estradiol 17-beta-dehydrogenase 11-like protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.698
APOO	LIPC	ENSECAP00000011220	ENSECAP00000018498	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	Lipase C, hepatic type.	0.671
APOO	PM20D1	ENSECAP00000011220	ENSECAP00000032074	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	Peptidase M20 domain containing 1.	0.740
APOO	SCPEP1	ENSECAP00000011220	ENSECAP00000029339	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	Carboxypeptidase; Belongs to the peptidase S10 family.	0.679
ASS1	OAT	ENSECAP00000005493	ENSECAP00000012723	Argininosuccinate synthase 1.	Ornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.980
ASS1	OTC	ENSECAP00000005493	ENSECAP00000020428	Argininosuccinate synthase 1.	Ornithine carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.999
ASS1	PM20D1	ENSECAP00000005493	ENSECAP00000032074	Argininosuccinate synthase 1.	Peptidase M20 domain containing 1.	0.832
ASS1	PSAT1	ENSECAP00000005493	ENSECAP00000015783	Argininosuccinate synthase 1.	Phosphoserine aminotransferase.	0.716
CPN1	APOO	ENSECAP00000021654	ENSECAP00000011220	Carboxypeptidase N subunit 1.	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.793
CPN1	HSD17B11	ENSECAP00000021654	ENSECAP00000006260	Carboxypeptidase N subunit 1.	Estradiol 17-beta-dehydrogenase 11-like protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.742
CPN1	LIPC	ENSECAP00000021654	ENSECAP00000018498	Carboxypeptidase N subunit 1.	Lipase C, hepatic type.	0.724
CPN1	PM20D1	ENSECAP00000021654	ENSECAP00000032074	Carboxypeptidase N subunit 1.	Peptidase M20 domain containing 1.	0.770
CPN1	SCPEP1	ENSECAP00000021654	ENSECAP00000029339	Carboxypeptidase N subunit 1.	Carboxypeptidase; Belongs to the peptidase S10 family.	0.737
HSD17B11	APOO	ENSECAP00000006260	ENSECAP00000011220	Estradiol 17-beta-dehydrogenase 11-like protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.698
HSD17B11	CPN1	ENSECAP00000006260	ENSECAP00000021654	Estradiol 17-beta-dehydrogenase 11-like protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Carboxypeptidase N subunit 1.	0.742
HSD17B11	LIPC	ENSECAP00000006260	ENSECAP00000018498	Estradiol 17-beta-dehydrogenase 11-like protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Lipase C, hepatic type.	0.665
HSD17B11	PM20D1	ENSECAP00000006260	ENSECAP00000032074	Estradiol 17-beta-dehydrogenase 11-like protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Peptidase M20 domain containing 1.	0.713
HSD17B11	SCPEP1	ENSECAP00000006260	ENSECAP00000029339	Estradiol 17-beta-dehydrogenase 11-like protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Carboxypeptidase; Belongs to the peptidase S10 family.	0.678
LIPC	APOO	ENSECAP00000018498	ENSECAP00000011220	Lipase C, hepatic type.	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.671