STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OTULINOTU deubiquitinase with linear linkage specificity. (350 aa)    
Predicted Functional Partners:
F7CNV6_HORSE
Uncharacterized protein.
    
 0.982
SNX27
Sorting nexin 27.
    
 
 0.942
SHARPIN
SHANK associated RH domain interactor.
    
 0.898
LOC100071666
RanBP2-type domain-containing protein.
    
 0.898
UBC
Ubiquitin B.
    
 0.889
UBC-2
Ubiquitin-related; [Ubiquitin]: Exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repa [...]
    
 0.889
RBCK1
RANBP2-type and C3HC4-type zinc finger containing 1.
   
 0.878
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.853
OTUD3
OTU deubiquitinase 3.
   
  
 0.834
RPS27A
Ribosomal protein S27a.
    
 0.807
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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