STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100065387Carcinoembryonic antigen-related cell adhesion molecule 1 isoform 4L. (522 aa)    
Predicted Functional Partners:
LOC100069277
Uncharacterized protein.
  
0.571
CHUK
Component of inhibitor of nuclear factor kappa B kinase complex.
   
 0.539
RELA
RELA proto-oncogene, NF-kB subunit.
   
 0.538
IKBKB
Inhibitor of nuclear factor kappa B kinase subunit beta.
   
 0.538
REL
REL proto-oncogene, NF-kB subunit.
   
 0.535
RELB
RELB proto-oncogene, NF-kB subunit.
   
 0.535
TGFB1
Transforming growth factor beta-1 proprotein; Transforming growth factor beta-1 proprotein: Precursor of the Latency-associated peptide (LAP) and Transforming growth factor beta-1 (TGF-beta-1) chains, which constitute the regulatory and active subunit of TGF-beta-1, respectively. Transforming growth factor beta-1: Multifunctional protein that regulates the growth and differentiation of various cell types and is involved in various processes, such as normal development, immune function, microglia function and responses to neurodegeneration (By similarity). Activation into mature form fo [...]
   
 0.514
TMPRSS6
Transmembrane serine protease 6; Belongs to the peptidase S1 family.
    
 0.505
SKP1
S-phase kinase associated protein 1; Belongs to the SKP1 family.
   
 0.450
MAP3K8
Mitogen-activated protein kinase kinase kinase 8.
   
 0.449
Your Current Organism:
Equus caballus
NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.